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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs138511097 chr12:112280085 TGCTTCG/T 6.63E-6 191 12.57 14.9 4.03 KM Plot
LIHC rs1388309 chr4:44647092 G/A 6.05E-5 189 5.7 13.17 16.6 KM Plot
LIHC rs139007758 chr2:202190950 TG/T 0 189 13.35 13.38 0.37 KM Plot
LIHC rs139336281 chr2:201900140 G/A 0 192 13.35 13.73 0.37 KM Plot
LIHC rs1394802 chr12:116975822 T/C 1.59E-10 189 14.53 11.13 0.2 KM Plot
LIHC rs140434853 chr11:73531784 A/AATATAT 1.38E-5 190 13.55 13.17 1.87 KM Plot
LIHC rs1404453 chr7:64438667 G/A 4.0E-12 192 1.77 5.7 13.97 KM Plot
LIHC rs140938940 chr3:50472565 G/GGTGT 0.000282 190 13.98 13.17 8.33 KM Plot
LIHC rs1409434 chr13:46646444 A/G 0.000202 187 12.95 14.2 7.87 KM Plot
LIHC rs140958465 chr9:33087938 C/T 6.27E-5 189 12.87 15.07 10.27 KM Plot
LIHC rs141915154 chr4:57203683 A/ACTT 4.94E-7 189 13.78 12.8 0.2 KM Plot
LIHC rs142037346 chr9:33088439 A/G 6.27E-5 189 12.87 15.07 10.27 KM Plot
LIHC rs142146821 chr4:57201520 A/G 5.65E-7 190 13.73 13.78 0.2 KM Plot
LIHC rs1426726 chr4:100703001 C/T 0.000215 192 13.58 13 6.3 KM Plot
LIHC rs142915302 chr12:112248212 TTC/T 4.92E-6 191 13.03 14.98 4.03 KM Plot